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  • *[[Delimited file: variable (e.g. gene) per row | Tab delimited file: variable (e.g. gene) per row]] *[[Delimited file: variable (e.g. gene) per row | Comma delimited file: variable (e.g. gene) per row]]
    23 KB (2,750 words) - 12:05, 2 August 2021
  • 203 bytes (27 words) - 13:46, 17 April 2015
  • Each variable should follow this pattern: === Standard Variable ===
    17 KB (1,915 words) - 05:32, 12 January 2022
  • ...ble that specifies a module to use the selected file names from the sample set.
    187 bytes (30 words) - 18:15, 14 June 2016
  • Set to True if the row being imported is an observation. Default is False (row is a variable).
    95 bytes (18 words) - 19:34, 21 February 2012
  • ...user plans to use the BAM files in other programs, it is recommended they set the [[OutputFolder|Output folder]]. This will export the BAM files to the #Filter exons for those expressed in one set and absent in the other set
    9 KB (1,348 words) - 18:11, 16 October 2020
  • * If all groups meet the criterion - When selected, will allow a variable (or observation) to pass the filter criteria only if ALL groups meet the cr * If any group meets the criterion - When selected, will allow a variable (or observation) to pass the filter criteria if ANY group meets the criteri
    4 KB (571 words) - 17:21, 3 February 2016
  • When set to True, the software will not check to make sure variable and observation names are unique. When set to False, if a variable or observation name is not unique, an "_" will be appended as appropriate.
    210 bytes (37 words) - 15:15, 26 February 2012
  • ...user plans to use the BAM files in other programs, it is recommended they set the [[OutputFolder|Output folder]]. This will export the BAM files to the s ...ics for only those regions (or if you were only particular interested in a set of genes or regions and wanted to see the coverage statistics). User must p
    7 KB (1,026 words) - 18:11, 16 October 2020
  • ...ata object includes expression data (a table of expression levels for each variable in different samples), design table (description of samples, such as condit ...ta#Delimited Variable Text or Excel Files | Tab (or comma) delimited file: variable (e.g. gene) per row]]
    7 KB (863 words) - 18:24, 28 March 2012
  • | Min|| minimum value in that variable or observation|| | Max|| maximum value in that variable or observation||
    3 KB (385 words) - 15:17, 14 March 2012
  • === <div id="Delimited Variable Text or Excel Files">Delimited Variable Text or Excel Files</div> === ...file: variable (e.g. gene) per row''', or adding a '''Tab delimited file: variable (e.g. gene) per row '''is essentially the same, the only difference being t
    22 KB (3,535 words) - 20:44, 1 April 2016
  • 348 bytes (25 words) - 14:33, 1 July 2016
  • ...l%E2%80%93Wallis_one-way_analysis_of_variance KruskalWallis] test for each variable. This generates an Inference table. However, this menu option is not the re * Alpha level - This allows the user to set a p-value cutoff for Lists which are automatically generated for each compa
    2 KB (253 words) - 20:54, 11 April 2012
  • ...vation clusters will be generated. The module will create Cluster objects (variable and observation) in the Cluster tab of the Solution Explorer. Using the Vie ...ropdown box allows the user to select Log2 or Linear scale. This should be set to the scale used for the selected Data object (i.e. if the data has been l
    3 KB (520 words) - 20:13, 25 April 2012
  • ...Comma delimited file: variable (e.g. gene per row), or adding a Text file: variable (e.g. gene per row) is essentially the same, the only difference being that ...ile. This file must contain a first column containing gene names (or probe set names). Each column is an observation (or chip). (WARNING: EACH COLUMN MUS
    2 KB (347 words) - 13:21, 8 August 2017
  • ...a delimited file: observation (e.g. sample per row) or adding a Text file: variable (e.g. sample per row) is essentially the same, the only difference being th ...olumn containing observation names (or chip names). Each column is a probe set (or gene, etc.).
    1 KB (250 words) - 22:13, 12 May 2013
  • ...m a list of columns in the design table. The group should be a categorical variable (i.e. a factor). ...s would be generated: 4hr vs 0hr, 8hr vs 0hr, 16hr vs 0hr. If '''By''' was set to be ''Treatment'', then the same 3 comparisons would be generated for eac
    3 KB (505 words) - 11:56, 2 August 2021
  • ...e the variables. However, in Array Studio, for algorithms that may require variable normalization (i.e. hierarchical clustering, using Pearson for "Distance"), ...g the percentage of variables that should be used to make up the invariant set (default percentage is 80%).
    8 KB (1,206 words) - 14:58, 10 March 2017
  • minimum value in that variable or observations maximum value in that variable or observation
    6 KB (849 words) - 17:53, 18 July 2016

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