Recent Edited Articles

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All Recent Articles

-09/19/22: Omic Python API
-09/19/22: Land normalization of expression data
-09/13/22: BatchExportProject
-09/09/22: IPA Integration
-09/06/22: How to remove land local cache
-09/02/22: SingleCell - CellMap (Expression Overlay) View
-09/02/22: CellMapBrowser
-09/02/22: Manage Sample Clinical Data
-09/02/22: Introduction to TCGA Land Content
-09/02/22: Osp
-09/02/22: Genomemark track: tab delimited file
-09/02/22: DESeq2R Analysis
-09/02/22: DESeq2Test(R).pdf
-09/02/22: Bas and BAM files
-09/02/22: Oshell
-09/02/22: SingleCell - Gene Expression Violin Plot
-09/02/22: MapRnaSeqReadsToGenome
-09/02/22: Common ArrayStudio Launching Issues
-09/02/22: Application validation did not succeed
-09/02/22: How to resolve HRESULT 0x8007000B Error
-09/02/22: Array Studio IT Requirements
-09/02/22: I am getting the error "Application cannot be started" when I try to launch the webstart application
-09/02/22: Typical way to update/restart ArrayServer
-09/02/22: GroupingFile
-09/02/22: CCLE GTEx TCGA Virtual Land
-09/02/22: Hardware / Software requirements for Array Server
-09/02/22: Template:Install Oshell
-09/02/22: Template:Version11
-09/02/22: Template:LinuxLibraryRequirement
-09/02/22: Template:InstallMono
-09/02/22: Template:InstallLibgdiplus
-09/02/22: ArrayServer Configuration with Cloud
-09/02/22: RnaSeqPipeline
-09/02/22: Land R API
-09/02/22: Template:InstallDocker20.10
-09/02/22: Template:InstallSqlite
-09/02/22: Install OmicSoft Server v12 on Ubuntu 20
-09/02/22: ArrayServer.cfg
-09/01/22: LandTools
-09/01/22: How to Update/Restart OmicSoft Server
-08/31/22: OmicSoft Suite IT Requirements
-08/30/22: ArrayServer folder mapping and management
-08/24/22: OmicsoftDirectory
-08/24/22: Template:CertificatePrerequisites
-08/18/22: Browse Files in Windows Explorer
-08/16/22: Error: Failed to download from an Omicsoft URL
-08/16/22: Migrate OmicSoftServer v11 to v12
-08/16/22: DownloadSRAData.pdf
-08/16/22: Add Table From File
-08/16/22: Virtual Land
-07/27/22: Template:InstallMono6
-07/27/22: Running Array Server in Windows
-07/27/22: CombinedFusionAnalysis.pdf
-07/27/22: Ngs FilterNgsFiles.pdf
-07/27/22: Cloud Preferences
-07/27/22: Cloud proxy machine
-07/27/22: Cloud Project
-07/27/22: Template:Install R 404 on Ubuntu 20
-07/27/22: Recovering OmicSoft Studio Settings
-07/27/22: ArrayStudio ClickOnce Launch in Mac
-07/27/22: Build AWS Ubuntu AMI for OmicSoft Cloud Computing
-07/27/22: Building AWS AMI on Ubuntu 20 and mono 6 for Omicsoft Cloud Computing
-07/27/22: Template:ConfigArrayServer
-07/27/22: Viewer Wizard.pdf
-07/27/22: PublishProject.pdf
-07/27/22: Activate Array Studio
-07/27/22: Pre-built OmicSoft Ubuntu AMIs
-07/27/22: Pre-built OmicSoft Amazon Linux 2 AMIs
-07/27/22: AssociatePublicIpAddress
-07/27/22: DynamicCorrelation.Comparison Comparison
-07/27/22: Install OmicSoft v12 on Ubuntu20 for Omicsoft Cloud Computing
-07/27/22: Template:RequiredLinuxPackagesUbuntu
-07/27/22: Cloud data flow
-07/27/22: MergeNgsSummaryFiles
-07/27/22: ManageSessions.pdf
-07/27/22: Sample.template
-07/27/22: Default.template
-07/27/22: CanExecuteByWebService
-07/27/22: Show Sample Template
-07/27/22: Show SampleSet Template
-07/27/22: Set up project meta data template
-07/27/22: Getting Started With Server Analysis
-07/27/22: Master Server and Analytic Server
-07/27/22: OmicSoft Server Ubuntu 20 AMI
-07/27/22: AddView
-07/27/22: GeneSetAnalysis.pdf
-07/27/22: OmicSoft Server v12 - TLS Configuration
-07/27/22: Increase Cloud analysis memory map
-07/27/22: Run OmicSoft Server v12 on Ubuntu from Pre-built AMIs
-07/27/22: Template:UpdateOshell v12
-07/27/22: Install OmicSoft v12 on Amazon Linux 2 for OmicSoft Cloud Computing
-07/27/22: GenomeIndex folder
-07/27/22: Install OmicSoft Server v12 on Windows
-07/27/22: Run OmicSoft Server v12 on Amazon Linux 2 from Pre-built AMIs
-07/27/22: Install OmicSoft Server v12 on Amazon Linux 2
-07/27/22: Run OmicSoft Server v12 on Red Hat from Pre-built AMIs
-07/27/22: Install OmicSoft Server v12 on Red Hat
-07/27/22: Template:V12 Release Info
-07/27/22: Land R API with Omicsoft v12
-07/27/22: Template:UpdateOshell
-07/27/22: Template:InstallOmicSoftServer
-07/27/22: Template:UpdateOmicSoftServer
-07/27/22: Template:CertificateSetup
-07/27/22: Template:UpdateCertificateStores
-07/27/22: OmicSoft Server v12 - Certificates Setup
-07/27/22: Oshell encrypt
-07/27/22: EncryptedAWSKeys
-07/27/22: ArrayServer.cfg for v12
-07/27/22: Template:ConfigArrayServerv12
-07/27/22: Template:InstallR404Rpm
-07/27/22: Template:CheckLibgdiplus
-07/27/22: Template:InstallAwsCliV1
-07/27/22: Template:RequiredLinuxPackagesRpm
-07/27/22: Template:AWSPrerequisites
-07/27/22: Run OmicSoft Server v12 on CentOS from Pre-built AMIs
-07/27/22: Install OmicSoft Server v12 on CentOS
-07/27/22: Template:ServerAmiRecommendation
-07/27/22: OmicSoft Suite v12 - Oshell Installation
-07/27/22: Template:InstallMono6Rpm
-07/27/22: Template:InstallOshellV12
-07/27/22: Template:InstallMono6Ubuntu
-07/27/22: Template:CreateMono6Symlinks
-07/27/22: Template:InstallMono6Repo
-07/27/22: FileGrouping
-07/27/22: Refresh DEseq2R script
-07/27/22: OmicSoft Amazon Machine Images (AMIs)
-05/16/22: SingleCell - Percentage of Expressing Cells
-05/16/22: Template:ServerLicense
-05/16/22: Getting Started with the Genome Browser
-05/16/22: Getting Started with RT-PCR Analysis
-05/16/22: Getting Started with RNAseq Analysis
-05/16/22: Getting Started with Microarray Analysis
-05/16/22: Getting Started with DNAseq Analysis
-05/16/22: Getting Started with Copy Number Variation Analysis
-05/16/22: Introduction to OmicSoft
-05/16/22: Getting Started with DiseaseLand
-05/16/22: OncoLand Case Study - OncoGEO
-05/16/22: OncoLand Case Study - Differential Expression within and between Tumor Types
-05/16/22: OncoLand Case Study - Cox Model
-05/16/22: OncoLand Case Study - Summarize Mutation Count
-05/16/22: OncoLand Case Study - Co-mutated Genes
-05/16/22: OncoLand Case Study - SampleSets with Grouping
-05/16/22: OncoLand Case Study - Clinical Variables
-05/16/22: OncoLand Case Study - Custom Query
-05/16/22: Getting Started With OncoLand
-05/06/22: Getting Started - OmicSoft Suite V11 and Below
-02/17/22: Error: Unable to read beyond the end of the stream
-02/11/22: Update Browser and Data object file locations
-02/10/22: Mode
-02/09/22: Check List for ArrayServer Migration
-02/09/22: Scaling Land FPKM values to TPM
-02/04/22: SearchFiles
-02/04/22: OmicSoft Land Metadata Definitions
-02/01/22: Ngs MapRnaSeqSingleCellReadsToGenomeTags.pdf
-01/31/22: Error Instance creation is not successful
-01/31/22: InstanceType
-01/29/22: Ngs 10X V1 Preprocess.pdf
-01/29/22: ManageServerJobs FetchJobStatus
-01/27/22: TextDumpArrayLandGeneData
-01/27/22: CloseLandClinical
-01/27/22: SingleCell - Multi-Gene Expression Violin Plot
-01/18/22: External Script Integration
-01/16/22: Macro
-01/16/22: Options
-01/12/22: Server Script
-01/12/22: ExecuteCommand
-01/11/22: Genetics NormalizeSnpStrand.pdf
-01/07/22: Build AWS Amazon Linux 2 AMI for OmicSoft Cloud Computing
-01/03/22: Cannot create channel sink to connect to URL
-12/30/21: Error: EOF marker is absent. The input is probably truncated
-12/21/21: Show summary information
-12/20/21: Controlled Land Data Access
-12/16/21: Land ReportTopFusion.pdf
-12/13/21: EnableCFRPart11
-12/11/21: Array Server Virtual Path
-12/11/21: ExecuteShortCommand
-12/06/21: ArrayLand Online Help
-11/28/21: Steps to build AWS ArrayServer with cloud plugin
-11/20/21: Gnomad
-11/20/21: HGMD
-11/20/21: HGNC
-11/20/21: Human DNA Repair Genes
-11/20/21: Entrez
-11/20/21: OMIM
-11/20/21: TCGA Germline
-11/20/21: FitCons
-11/19/21: IpaUploadV2
-11/19/21: IpaUpload.pdf
-11/19/21: Familial Cancer Genes
-11/12/21: SessionExpiration
-11/05/21: Preprocess of SingleCell RNA-Seq Data
-11/02/21: ChangeView
-10/27/21: Installation Requirements For Array Studio
-10/26/21: Array Server Requirements
-10/25/21: SandBox
-10/21/21: LandTextDump
-10/18/21: AddMappedDnaSeqReads
-10/13/21: RunServerPipeline
-10/12/21: Run
-10/11/21: EScript Syntax Updates
-10/11/21: ErrorOnStdErr
-10/08/21: A list of compiled genome and gene model from OmicSoft
-10/08/21: OmicSoft RefGene model
-09/30/21: Files
-09/30/21: OutputFolder
-09/29/21: ImportAffymetrixCel.pdf
-09/29/21: BuildCustomAnnotation.pdf
-09/23/21: SearchGxl
-09/21/21: Alteration.Omicprint
-09/20/21: UpdateAllCloudLands
-09/20/21: Annotate Variants in Array Studio
-09/16/21: Install R Packages for ArrayServer
-09/16/21: R packages integration with ArrayStudio
-09/16/21: RtsneV2.pdf
-09/16/21: Setup tSNE in R engine
-09/16/21: Voom.pdf
-09/16/21: Sam.pdf
-09/16/21: ImportIlluminaReportLumi.pdf
-09/13/21: Ftpupload
-09/12/21: Introduction to GTEx Land Content
-09/12/21: Alignment track: multiple sorted BAM files
-08/30/21: Example .proxy file
-08/30/21: Setting Proxy For Omicsoft ArrayServer
-08/27/21: SetLocalRScriptEngine.pdf
-08/27/21: Import Expression Data
-08/27/21: ManageServerRScriptEngine.pdf
-08/27/21: RScriptEngine.RPath
-08/24/21: UnregisterSamples
-08/23/21: IA AddSamples
-08/23/21: ManageScripts Reload
-08/13/21: Install R locally.pdf
-08/12/21: Build AWS RedHat AMI for OmicSoft Cloud Computing
-08/11/21: R Integration
-08/11/21: Run DESeq2 RScript
-08/09/21: Land PublishToGxl.pdf
-08/04/21: Analytic Module Versions
-08/03/21: External Scripts with Dockers
-07/31/21: Bim
-07/30/21: DESeq vs DESeq R Package
-07/29/21: ComparisonsPrimaryGrouping
-07/29/21: ComparisonsSecondaryGrouping
-07/29/21: ArrayLand Configuration Options
-07/27/21: Command
-07/21/21: DESeq2OneWayTest.pdf
-07/14/21: DeleteServerProject
-06/30/21: Amazon S3 file not found
-06/29/21: OmicSoft RNA-Seq Pipeline Run on Seven Bridges
-06/23/21: GWAS-VCF
-06/23/21: Multiple ways to add AssociationSets in Land
-06/23/21: Land ExportFromGxl.pdf
-06/23/21: DbsnpVersion
-06/23/21: ExportFromGxl
-06/22/21: Amazon function list required to run Omicsoft On Cloud
-06/05/21: MutationGeneModelID
-06/04/21: The requested view cannot be retrieved from server
-06/04/21: Oshell Utility
-06/03/21: SingleCell Lands - Data Filters
-06/03/21: DESeq2Test
-06/02/21: Introduction to GENIE Land Content
-06/01/21: Error: Cloud file does not exist
-05/27/21: Enable swap file for memory
-05/25/21: ArrayServer Setup for Seven Bridges Integration
-05/23/21: Genome Reference and Gene Models supported in Land Platform
-05/22/21: Show Land Versions
-05/18/21: ODP setup for Windows ArrayServer using Oracle Database
-05/17/21: GTT
-05/07/21: OmicsoftUpdater error SendFailure (Error writing headers)
-05/05/21: FetchLandProjectMetaData
-05/03/21: Custom Views in Land
-04/27/21: Introduction to BeatAML Land
-04/27/21: Genetics GwasQCPipeline2.pdf
-04/27/21: BuildOsp2FromTxt
-04/26/21: FusionMap
-04/26/21: Fam
-04/26/21: NormalizeSnpStrand
-04/23/21: Modify ArrayStudio ClickOnce Launch Link in Mac
-04/23/21: Force Column Types
-04/15/21: Tips In Setting Up Oshell
-04/15/21: Run-omicsoft.sh
-04/15/21: Setup ArrayServer in Cluster
-04/15/21: Install Array Server On CentOS or RedHat
-04/14/21: Therapeutic Area
-04/14/21: Master and Analytic Servers
-04/14/21: Is Estimate the same as a fold change? If not, what is a Fold Change?
-04/14/21: Oalign.sh
-04/14/21: Ojob.sh
-04/14/21: OmicsoftUpdater
-04/02/21: EnableGeneticsLandAccessLogging
-04/02/21: MaxGeneCountForH5AD
-04/02/21: RnaSeq Transcript.SurvivalView
-04/01/21: Ngs SentieonTNSeqPipeline.pdf
-04/01/21: Ngs SentieonDnaSeqPipeline.pdf
-04/01/21: Array Studio on OS X
-03/31/21: Source
-03/30/21: RemapAssociationIDs
-03/30/21: Land RemapAssociationIDs.pdf
-03/30/21: Land RemapSampleIDs.pdf
-03/30/21: RemapSampleIDs
-03/30/21: ArrayLand TCGA Installation
-03/30/21: Sample MetaData File
-03/25/21: Updating Single Cell Lands
-03/24/21: OmicScript pipeline for RNA-Seq data analysis
-03/24/21: Setup Web Service
-03/23/21: LocalOnly
-03/21/21: Statistical Comparisons in Lands
-03/18/21: EnableAWSSpot
-03/05/21: CNV.Summary
-03/05/21: RNA-Seq Normalized FPKM Values in Land
-03/02/21: Expression Intensity Probes.DetectionSummary
-02/25/21: Error: Invalid or corrupted data
-02/20/21: Bas
-02/18/21: Introduction to Blueprint Land Content
-02/18/21: Introduction to CCLE Land Content
-02/12/21: UserAuthorization
-02/12/21: EnableLDAP
-02/10/21: Introduction to TRACERx Land
-02/04/21: Land Explorer vs Array Studio Lands
-02/03/21: Omicsoft GenCode Gene Model
-02/03/21: Pediatrics
-01/12/21: Mount drive
-01/05/21: Scaling Land Text Dump RNA-seq FPKM values to TPM
-01/05/21: Land TextDump Structure
-12/22/20: CellClusterDistribution
-12/22/20: SampleComposition
-12/14/20: ProjectDistribution
-12/14/20: SampleDistribution
-11/19/20: What does "unknown error (0x2af9)" mean when connecting to OmicSoft Server?
-11/09/20: Expose Script in GUI
-11/04/20: UpdateCloudLands
-10/31/20: Land ExpressionToExpression.pdf
-10/23/20: OverrideMapping
-10/23/20: PanelID
-10/23/20: ParallelJobNumber
-10/22/20: ArraySuite Tutorial V8.0
-10/22/20: ArraySuite Tutorial V7.0
-10/22/20: OmicSoft DEV Build
-10/21/20: Ngs BuildReferenceLibrary.pdf
-10/21/20: Tutorials
-10/16/20: ArraySuite 7.0 Release Note
-10/16/20: Project Design Parsing Instruction
-10/16/20: Add SampleSet
-10/16/20: DNA-Seq Getting Started
-10/16/20: Sample Registration File
-10/16/20: Proxy authentication error, how to fix it?
-10/16/20: Search Types
-10/16/20: White Papers
-10/16/20: Introduction to HumanDisease Content
-10/16/20: Introduction to DiseaseLand Content
-10/11/20: Bed
-10/09/20: Open ArrayStudioLauncher with a link to content
-10/09/20: Preferences.pdf
-10/09/20: Preferences
-10/01/20: Land metadata curation - aging
-09/24/20: SolidTumors Virtual Land
-09/24/20: Connecting to Server
-09/24/20: CreateVirtualLand
-09/24/20: RNASeq Virtual Land
-09/24/20: Settings for Creating Virtual Land
-09/10/20: FunctionalAnnotationFiles
-09/08/20: Introduction to TumorMutations Land Content
-09/04/20: Exon Data table
-09/04/20: Genotyping AnnotateSnps.pdf
-08/29/20: Show Land Statistics
-08/17/20: Build Project Land from your own OmicSoft Project.pdf
-08/17/20: Ngs SummarizeSnp.pdf
-08/14/20: Variable MetaData
-08/13/20: MicroArray ColoredScatterView
-08/11/20: Example of running 100 CCLE samples on cloud
-08/11/20: AWS Cloud EBS storage logic
-08/11/20: How to load bam files from external into OmicSoft RNAseq pipeline
-08/10/20: DisconnectFromServer
-08/07/20: How to Cite OmicSoft
-07/31/20: How to resolve unequal plot heights in trellised plots
-07/30/20: Comparison Categories
-07/28/20: Check when a curated project was added to a Land
-07/28/20: ComparisonLandTools
-07/13/20: Ngs BamTools.pdf
-07/13/20: BamTools
-07/08/20: DataMode
-07/06/20: How to back up Land SampleSets
-07/01/20: Sort trellised charts by P-value
-06/29/20: Array Express experiment
-06/18/20: Create SampleSet from Comparisons
-06/12/20: In Land why I can see a few somatic mutations identified in normal or control samples
-06/12/20: User Guides
-06/05/20: Building Land User Guide
-06/04/20: Building Land From Raw Data
-05/28/20: Save and open land view
-05/18/20: Ngs MapRnaSeqReadsToGenome.pdf
-05/17/20: Ngs ReportSingleCellCounts.pdf
-05/13/20: Aligned Data QC for RNA-Seq
-05/13/20: Quantification in Strand Specific RNA-Seq dataset
-05/13/20: Contrast Type
-05/07/20: Create ComparisonLand from External Inference Reports
-05/07/20: Fusion PE report
-05/07/20: ReportPairedEndFusionGenes.pdf
-05/07/20: Combined Fusion report
-05/06/20: TxtDump Land Time
-05/05/20: UnstackTableFile
-05/05/20: UnstackTableFile.pdf
-05/05/20: ImportNanoStringRcc.pdf
-05/05/20: General Purpose ExternalScript Pscript
-04/27/20: ImportIlluminaReport.pdf
-04/21/20: Kallisto Merge Python Script
-04/21/20: FileFormat
-04/21/20: Dockerized STAR Index
-04/20/20: Land PublishCloudLand.pdf
-04/16/20: Ngs SummarizeRnaSeqTrend53.pdf
-04/16/20: Introduction to Land Content
-04/15/20: RNASeqQCMetrics
-04/14/20: Viewing novel exon junctions in the genome browser
-04/10/20: Land Explorer did not find any lands from your server
-04/09/20: Profile ExpressionProfilingEfficiency
-04/09/20: Ngs BuildGeneModel.pdf
-04/05/20: Remove
-04/02/20: Template:LinearModelDesignCharacters
-04/01/20: ExportGeneModel
-03/23/20: Database disk image is malformed
-03/05/20: ExportNgsData.pdf
-03/05/20: UNMAPPED BAM
-03/05/20: Survival view in analysis tab
-03/05/20: DownloadGEOData.pdf
-03/04/20: Build ComparisonLand From Raw Data
-03/03/20: Expression of a gene set in Lands
-03/03/20: RnaSeq Transcript.MeanVariable
-03/02/20: GEO series
-02/19/20: SubnetID
-02/13/20: Design
-02/11/20: Comparison MetaData File
-02/11/20: Comparison Data File
-02/10/20: TextDumpLandData.pdf
-02/10/20: DownloadLandData.pdf
-02/10/20: TextDumpLandData AllGenes.pdf
-02/06/20: VariableSet
-01/28/20: Array Viewer
-01/15/20: Comparison.DiseaseVSNormal.Heatmap
-01/15/20: AttachDesign
-01/15/20: ENCODE Enhancers and Promoters
-01/15/20: Ngs MergeZim.oscript
-01/15/20: Ngs MergeZim.pdf
-01/15/20: RpmScaling
-01/13/20: ClinicalJoinSampling
-10/18/18: Automatic index
-10/16/18: Ngs SubsetNgsData.pdf
-09/27/18: Hardware/software requirements for LandExplorer
-09/25/18: RnaSeq Transcript.PooledControlSummary
-09/25/18: CuratedGWAS
-09/21/18: Create Land
-09/20/18: SampleRegistrationAccessLevel
-09/05/18: AdminSuperPassword
-08/30/18: Supported filter syntax in Array Studio
-08/29/18: ClusterMemFree
-08/24/18: Libgdiplus complie error
-08/24/18: Charting error in Oshell or ArrayServer run
-08/24/18: TCGA Marker Papers
-08/20/18: UseDev
-08/17/18: Using GeneticsLand
-08/15/18: HTTP Error 500.19 0x8007007e
-08/13/18: Ngs SC10xV2Preprocess.pdf
-08/13/18: ClinicalTableView
-08/10/18: GxL.PheWAS Land
-07/31/18: Ngs DnaSeqPipeline.pdf
-07/31/18: Ngs MapDnaSeqReads.pdf
-07/30/18: TableView
-07/25/18: GeneticsLandDirectory2
-07/25/18: GeneticsLandDirectory
-07/25/18: LandDirectory
-07/20/18: File opened that is not a database file
-07/19/18: Using Geneticsland R API
-07/17/18: Ngs BuildPremRNAGeneModel.pdf
-07/07/18: Land DeleteLand.pdf
-07/05/18: Manage GeneSet in ArrayLand
-07/05/18: Manage ResultSet in ArrayLand
-07/05/18: Manage SampleSet in ArrayLand
-06/20/18: Gene.AssociationTable
-06/18/18: GeneticsLand Overview
-06/06/18: SummaryStatistics.pdf
-06/06/18: Open in Powerpoint Error Message
-06/05/18: Land MeasurementToExpression.pdf
-06/05/18: Run KMeans RScript
-06/04/18: Variable Metadata
-06/04/18: Outlook loading profile
-06/01/18: DeleteLand
-06/01/18: MAGeCK Count from Fastq.pdf
-06/01/18: MAGeCK Gene Quantify from count file.pdf
-05/30/18: Land ReportTopTranscripts.pdf
-05/29/18: ServerDataMatrix.Virus.Variable
-05/29/18: Seurat.pdf
-05/18/18: Gene.ImputedSnpDose.GenomeBrowser
-05/18/18: Gene.VcfSnp.GenomeBrowser
-05/18/18: Gene.ArraySnp.GenomeBrowser
-05/16/18: Illegal characters in path
-05/16/18: Ngs SCRNASeqMetrics.pdf
-05/15/18: Error: The requested name is valid, but no data of the requested type was found
-05/14/18: Port
-05/09/18: Introduction to OncoGEO Land Content
-05/09/18: RScriptEngine.RLibPath
-05/08/18: Genetics PairwiseLD.pdf
-05/03/18: RNASeq Comparison Land with PScript
-05/02/18: ComparisonLand