Pre-built OmicSoft Ubuntu AMIs
From Array Suite Wiki
These AMIs are customized for on-demand cloud-based NGS analysis via OmicSoft Suite's "Server on the Cloud" add-on, to run with Amazon M4-class instances.
If you would like to run analyses on AWS M5-class instances, OmicSoft supports Pre-built AMIs on Amazon Linux 2.
Use our Amazon Linux 2-based AMIs to run cloud-based analysis on M5 class instances
OmicSoft Suite v12: Mono6-based, R4.0.4, Docker 20 AMIs for Oshell version 12.1 (recommended for v12)
These AMIs were built for use with OmicSoft Suite 12.1, using the steps described on Install OmicSoft v12 on Ubuntu20 for Omicsoft Cloud Computing.
| Date Created | Region | AMI Name | AMI ID | AMI Snapshot ID |
|---|---|---|---|---|
| 27-05-2022 | US-East-1 (Virginia) | Oshell.V12-p-mono6-ubuntu20-20220520 | ami-084722262678355d9 | snap-0033471b934da8bf3 |
| 27-05-2022 | US-East-2 (Ohio) | Oshell.V12-p-mono6-ubuntu20-20220520 | ami-08c0e8748680c4a3b | snap-09985024b2a17b038 |
| 27-05-2022 | US-West-1 (N. California) | Oshell.V12-p-mono6-ubuntu20-20220520 | ami-05deb74ba4bb5ac69 | snap-0ef27145834ba4e0c |
| 27-05-2022 | US-West-2 (Oregon) | Oshell.V12-p-mono6-ubuntu20-20220520 | ami-08323130964096995 | snap-0e56d1096cf35f070 |
| 27-05-2022 | EU-West-1 (Ireland) | Oshell.V12-p-mono6-ubuntu20-20220520 | ami-01f9718c553242324 | snap-0b9419e1b728666c6 |
| 27-05-2022 | EU-West-2 (London) | Oshell.V12-p-mono6-ubuntu20-20220520 | ami-0928c0ab515e43468 | snap-0b974ce29414e380a |
| 27-05-2022 | EU-Central-1 (Frankfurt) | Oshell.V12-p-mono6-ubuntu20-20220520 | ami-0cb0df3333105e005 | snap-09b71f36780cd342d |
| 27-05-2022 | AP-Northeast-1 (Tokyo) | Oshell.V12-p-mono6-ubuntu20-20220520 | ami-0785afaabf99168b0 | snap-0dd2ada57a69e7db0 |
| 27-05-2022 | AP-Southeast-2 (Sydney) | Oshell.V12-p-mono6-ubuntu20-20220520 | ami-0155424ea4b9b8d0b | snap-0626a2ac79835fff4 |
OmicSoft Suite v11: Mono6-based AMIs (recommended for v11)
These AMIs were built using the steps described on Building AWS AMI on Ubuntu 20 and mono 6 and are recommended for all OmicSoft Cloud users unless specifically instructed to use a different AMI, or you built your own AMI following the same instructions.
| Date Created | Region | AMI Name | AMI ID | AMI Snapshot ID |
|---|---|---|---|---|
| 6/2021 | US-East-1 (Virginia) | Oshell2021Ubuntu20Mono6_latest | ami-05a7347f863981611 | snap-0eabbc72359aad870 |
| 6/2021 | US-West-1 (N. California) | Oshell2021Ubuntu20Mono6_final | ami-05c546faae126e219 | snap-05d4ceb017415e1d7 |
| 6/2021 | US-West-2 (Oregon) | Oshell2021Ubuntu20Mono6_final | ami-032ae2b3df61b9384 | snap-0f29327959a876f8a |
| 6/2021 | EU-West-1 (Ireland) | Oshell2021Ubuntu20Mono6_final | ami-07d88f9dcb03913d4 | snap-00608b1de6f30f7c5 |
| 6/2021 | EU-West-2 (London) | Oshell2021Ubuntu20Mono6_final | ami-0dced0e67e0cab989 | snap-0f34f977647220605 |
| 6/2021 | AP-Southeast-2 (Sydney) | Oshell2021Ubuntu20Mono6_final | ami-057b418dc1d0b4887 | snap-026d85d3cfd920907 |
Only for OmicSoft Suite v12: Mono6-based AMIs for Oshell version 12 (deprecated)
These AMIs were built for use with OmicSoft Suite 12, using the steps described on Building AWS AMI on Ubuntu 20 and mono 6.
| Date Created | Region | AMI Name | AMI ID | AMI Snapshot ID |
|---|---|---|---|---|
| Nov-21 | US-East-1 (Virginia) | Oshell.V12-ue1-p-mono6-ubuntu20-20211014-OmicSoftServiceUpdater | ami-03e02e22144957a9d | snap-0aad39149c7013cd3 |
| Nov-21 | US-West-1 (N. California) | Oshell.V12-uw1-p-mono6-ubuntu20-20211014-OmicSoftServiceUpdater | ami-0a36d2e85bb1e2235 | snap-033c7138513dcad62 |
| Nov-21 | US-West-2 (Oregon) | Oshell.V12-uw2-p-mono6-ubuntu20-20211014-OmicSoftServiceUpdater | ami-0f211c1181570baa5 | snap-01ead3b3bd0007a82 |
| Nov-21 | EU-West-1 (Ireland) | Oshell.V12-ew1-p-mono6-ubuntu20-20211014-OmicSoftServiceUpdater | ami-00b3d2efb9ec6c137 | snap-07fc42396b54cf8dd |
| Nov-21 | EU-West-2 (London) | Oshell.V12-ew2-p-mono6-ubuntu20-20211014-OmicSoftServiceUpdater | ami-04e3391e5271fc793 | snap-0fa2c0130462bf479 |
| Nov-21 | EU-Central-1 (Frankfurt) | Oshell.V12-ec1-p-mono6-ubuntu20-20211014-OmicSoftServiceUpdater | ami-0b3322da03e6342b9 | snap-0a6fc92f43c43dedb |
| Nov-21 | AP-Northeast-1 (Tokyo) | Oshell.V12-an1-p-mono6-ubuntu20-20211014-OmicSoftServiceUpdater | ami-033923a713ea1057b | snap-005c4997b20112261 |
| Nov-21 | AP-Southeast-2 (Sydney) | Oshell.V12-as2-p-mono6-ubuntu20-20211014-OmicSoftServiceUpdater | ami-0a6ddb0bfb769c523 | snap-0dcc193de00e5597b |
Mono4-based AMIs - previous generation (deprecated)
AMIs using mono-4.0.4 are based on Ubuntu 14.04.3 LTS (GNU/Linux 3.13.0-74-generic x86_64) as backbone. If you do not find an AMI in your AWS region, please contact omicsoft.support@qiagen.com.
| Date Created | Region | AMI Name | AMI ID | AMI Snapshot ID |
|---|---|---|---|---|
| 4/2020 | US-East-1 | Oshell2020withMono4.0.4 | ami-0bde320b171e25978 | snap-01721b011efb794bd |
| 4/2020 | US-East-1 | Oshell2020withMono4.8.1 | ami-01a2919f9c6fff2cb | snap-0d9cb6924b1e130c7 |
| 4/2020 | US-West-1 | Oshell2020withMono4.0.4 | ami-09b5c06dcd12b190a | snap-0650951ba18a68f83 |
| 4/2020 | US-West-1 | Oshell2020withMono4.8.1 | ami-095b80125cd8e4c03 | snap-0ba2b47d261458123 |
| 4/2020 | US-West-2 | Oshell2020withMono4.0.4 | ami-050a064a08b49e7bf | snap-075287deec40fcf0e |
| 4/2020 | US-West-2 | Oshell2020withMono4.8.1 | ami-006ed46e83f6bfe25 | snap-0d4f5fa74e7d5a31e |
| 4/2020 | EU-West-1 | Oshell2020withMono4.0.4 | ami-09af150b0f74fb260 | snap-099b7c18705243e27 |
| 4/2020 | EU-West-1 | Oshell2020withMono4.8.1 | ami-0e3559d8de7ff5b86 | snap-09cb49c1ff150ee32 |
| 4/2020 | EU-West-2 | Oshell2020withMono4.0.4 | ami-0a6ebc7e541be7aa5 | snap-060f49b2bad90cf8c |
| 4/2020 | EU-West-2 | Oshell2020withMono4.8.1 | ami-06a55cc91222acc71 | snap-0e3df6c4624448e5c |
| 4/2020 | AP-Southeast-2 | Oshell2020withMono4.0.4_a | ami-015566a4be6e8b244 | snap-00045baca8be526df |
| 4/2020 | AP-Southeast-2 | Oshell2020withMono4.8.1 | ami-06e88417c8b0c0e11 | snap-0932b66a39d0dd7ae |
Legacy OmicSoft AMIs (deprecated)
| 10/2017 | US-East-1 | OSUbuntuAMI201710 | ami-773de00d | snap-0997e3979b768dde3 |
| 10/2017 | US-West-1 | OSUbuntuAMI201710 | ami-0368984103f05bd1a | snap-00978cf8c6caba556 |
| 10/2017 | EU-West-1 | OSUbuntuAMI201710 | ami-0a26fb58a407a19ac | snap-063bdd16e950379d1 |
| 4/2017 | US-East-1 | OSUbuntuAMI201704 | ami-5dbe2a4b | snap-07a2e91f794c73678 |
| 5/2016 | US-East-1 | OSUbuntuAMI201605 | ami-4033c32d | snap-fe96391a |
| 5/2016 | US-West-1 | OSUbuntuAMI201605 | ami-60b5ce00 | snap-f85d17de |
| 5/2016 | EU-West-2 | OSUbuntuAMI201605 | ami-1a44537e | snap-0ab79d1ce89f6c736 |
AMI Build History
OSUbuntuAMI201605
Built in US-East-1, following instructions below. Ami=ami-4033c32d
OSUbuntuAMI042017
built based on ami-4033c32d in 04/2017; fixed the ulimit issue for root user; only users running GATK may hit the issue without this fix. Ami=ami-5dbe2a4b
OSUbuntu201710
built based on ami-5dbe2a4b in 10/2017; added basic python, R, and docker; updated OmicsoftUpdater to latest to have more DEV versions Ami=ami-773de00d
Oshell2020WithMono4.0.4
built based on ami-773de00d; updated oshell to 10.1.3.3, added ENA support and updated Docker.
Oshell2020WithMono4.8.1
built base on ami-773de00d; updated oshell to 10.1.3.3, added ENA support, updated Docker, and added mono4.8.1 (in mono-4.0.4 directory); only use if cloud jobs occasionally crash unexpectedly.
