Ngs VcfTools.pdf

From Array Suite Wiki

VCF Tools

The VCF Tools command will allow the user to perform various actions on a single or multiple VCF formatted files.

20131028 VCFTools.png


The first step is to add the VCF files by selecting either "Add", or "Search" from server.


  • Action
    • Sort VCF files by coordinate - Sorts the entries in the VCF file by the coordinates of the variation.
    • Index VCF files for analysis (.bim) - Encode in binary form for computer storage and processing purposes.
    • compress VCF files to BGZF files (.gz) - Use BGZF library to compress VCF to vcf.gz file.