Ngs ValidateNgsFiles.pdf

From Array Suite Wiki

Validate SAM/BAM Files

This module will validate BAM/SAM files by indicating the "count" of reads that fall into a particular "mismatch #" grouping when compared to the selected Genome.

NGSValidateNGSFiles1.png

General

Input

The first step is to add the BAM/SAM files by selecting either "Add", "Add Folder" or "Add List".

Options

  • Source File Format - Select the appropriate source file format (options include BAM and SAM formats).
  • The Genome model used for mapping must be selected.
  • Output name - The user can choose to name the output file.


NGSValidateNGSFiles2.png


OmicScript

ValidateNgsFiles