Ngs SubsetNgsData.pdf

From Array Suite Wiki

Subset

The Subset NGS data module can be used to subset any NGS read data. This can be accomplished by sub-setting references and/or observations. In most cases, references will be chromosomes. The resulting dataset will be a subset of the selected dataset.

General

NGSSubset1.png

Tips.pngIf subsetting a server-based NgsData object, be sure to save the project after applying your filter/selection, before you try subsetting.

Input/Output

  • The module can be run on all references, customized references, or a filtered by region set of references. In most cases, references will be chromosomes.
  • The module can also be run on all observations, visible observations, selected observations, or customized observations. The specified references and observations will be in the new subset data.

Options

  • Compress generated BAM files

OmicScript

NgsSubset