ManageBuckets.pdf

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Overview

Array Server includes a Bucket Analysis function that allows the user to choose a list of genes, which checks lists of gene "buckets" for over-representation against a “bucket” of genes. Clicking the Server Menu | Manage Buckets button will open the Manage Buckets window, allowing you to add or remove gene buckets.

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Input Data Requirements

To add a new list of gene buckets, a bucket .xml file or an already compiled Array Suite .buckets file is required.

GSEA buckets (.xml) file can be downloaded from http://software.broadinstitute.org/gsea/downloads.jsp.

Manage Buckets

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  • Add: Add buckets by loading .xml file or .buckets file.
  • Remove: Select a list of gene buckets that has already been added, and remove it from future analyses.

Output

A bucket will be added or removed from the list of available lists in Bucket Analysis, depending on which option you chose.


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