FileGrouping

From Array Suite Wiki


As an alternative to the GroupingFile, you can specify the Grouping information directly in the OScript using the FileGrouping Statement like:

Begin MapRnaSeqReadsToGenome /Namespace=NgsLib;
Files 
"/Users/administrator/MyData_1.fastq.gz 
/Users/administrator/MyData_2.fastq.gz
/Users/administrator/MyTest_1.fastq.gz
/Users/administrator/MyTest_2.fastq.gz
/Users/administrator/SRR065521.1.fastq.gz
/Users/administrator/SRR065521.2.fastq.gz"; 
FileGrouping "
MyData_1.fastq.gz,TestDataA
MyData_2.fastq.gz,TestDataA
MyTest_1.fastq.gz,TestDataA
MyTest_2.fastq.gz,TestDataA
SRR065521.1.fastq.gz,TestDataB
SRR065521.2.fastq.gz,TestDataB";
Reference Human.B37;
GeneModel Ensembl.R65; 
Options /PairedEnd=True /CompressionMethod=Gzip;
End;

Warning.png WARNING: This does not work for the special 3-column Grouping style for Sentieon