Duplication FragmentRange.DupLevel1Rate

From Array Suite Wiki

Fraction of paired alignments in the BAM file where 1 alignments total share the same start position:

StartPosition.DupLevel1Rate= # of start and end position pairs with 1 alignments / Alignment_Mapped

Alignments with same mapping position (start and end position of a read pair) are considered as duplicates.

These metrics are only for paired-end reads. For single-end reads, please use Duplication_StartPosition.DupLevel1Rate.

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