David.pdf
From Array Suite Wiki
DAVID
Overview
The DAVID command will allow a user to upload a list to DAVID (Database for Annotation, Visualization, and Integrated Discovery) for further gene annotation. For more information on DAVID, go to http://david.abcc.ncifcrf.gov/.
To run this module, select MicroArray | Annotation | DAVID.
Input Data Requirements
This module works on -Omic data types.
General Options
Input/Output
- Project & Data: The window includes a dropdown box to select the Project and Data object to be filtered.
- Rows: Specify which rows will be uploaded to DAVID.
WARNING: For DAVID Annotation, Array Studio only allows fewer than 1000 rows, so it would be good idea to filter the rows with a list using Customized rows
Options
- ID column: Specify which column Array Studio will use to represent variable list (e.g. probeset IDs or gene symbols).
- ID Type: David require users to specify the ID type for the uploaded ID list.
- Analysis type: The user can specify which annotation analysis DAVID performs once Array Studio uploads the list. Available options include Annotation Summary, Gene Report, and Functional Classification.
Output Results
After clicking Submit, Array Studio will open a new webpage for the user to check the analysis result on the DAVID website.
OmicScript
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