Browse Samples

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Browse Samples

Overview

Selecting "Browse Samples" will return all samples and sample sets that have been registered on the server.

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SampleSet Tab

Selecting the SampleSets tab in the Project Data Explorer (left window) will display all the SampleSets that are registered on the server. Details for any item on the left will be displayed in the right-side window under two different tabs:

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MetaData Tab

Displays all the related Meta data for a given SampleSet. These meta data fields are specified by the default.template that is maintained by the server administrator.

Info

Selecting the Info tab will display the access privileges for the SampleSet:

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  • Refresh - Will update the view to show any changes that were made to the SampleSet.
  • Update - Will register any changes or updates that are made to the SampleSet information.
  • Report Error - If an error is observed with the sample information, selecting this option will automatically generate a mail message which will include the sampleSet ID which can be sent to Omicsoft Support.

Right-click Options

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Right-clicking on a SampleSet will provide various options

  • View Samples - Will display the Samples that belong to the SampleSet
  • Edit Samples - Allows the user to edit the Sample information for the selected SampleSet.
  • Copy SampleSets - Copies the name of the selected SampleSet to the clipboard.
  • Remove From Server - Removes the selected SampleSet from the server.
  • Run Server Pipeline - Will use the selected SampleSet and open up the "Run Server Pipeline" window:

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From here, the user can set the options for running the pipeline in the "General" tab, from the "Script" tab they can select the script to run on the SampleSet, and from the "Parameters" tab the parameters are set for that particular script.

Samples Tab

The samples will appear in the Project Data Explorer (left window) grouped by the categories as specified by the server administrator. Details for any item on the left will be displayed in the right-side window:

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MetaData Tab

Displays all the related Meta data for a given sample. These meta data fields are specified by the default.template that is maintained by the server administrator.

Info Tab

  • Refresh - Will update the view to show any changes that were made.
  • Update - Will register any changes or updates that are made to the sample information.
  • Report Error - If an error is observed with the sample information, selecting this option will automatically generate a mail message which will include the sample ID which can be sent to Omicsoft Support.

Right-click Options

Image354.png Right-Clicking on samples will allow various options

  • View - Will display the Sample Template information for the selected sample(s).
  • View File Paths - Will display the FilePath information for the selected sample(s).
  • Edit - Allows the user to edit the Sample Template information for the selected sample(s).
  • Create SampleSet - Allows the user to create a new SampleSet using the for the selected sample(s).
  • Remove From Server - Removes the selected sample(s) from the server.


Tips: user can select multiple samples using shift or control and then view sample metadata in a table:

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